IL_7XAM_106

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7XAM|1|A|A|2826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_106 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.2777

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7XAM|1|A|C|2815
7XAM|1|A|G|2816
*
7XAM|1|A|C|2825
7XAM|1|A|A|2826
7XAM|1|A|G|2827

Current chains

Chain A

23S rRNA

Nearby chains