IL_7XAM_116

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

7XAM|1|B|A|4

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_116 not in the Motif Atlas

Geometric match to IL_5TBW_013

Geometric discrepancy: 0.2482

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7XAM|1|B|U|3
7XAM|1|B|A|4
7XAM|1|B|C|5
*
7XAM|1|B|G|113
7XAM|1|B|A|114

Current chains

Chain B

5S rRNA

Nearby chains

Chain P

50S ribosomal protein L18