IL_7XAM_126

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_126 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0583

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7XAM|1|A|G|1884
7XAM|1|A|G|1885
7XAM|1|A|A|1886
7XAM|1|A|A|1887
7XAM|1|A|C|1888
7XAM|1|A|U|1889
7XAM|1|A|C|1890
7XAM|1|A|G|1891
7XAM|1|A|G|1892
*
7XAM|1|A|C|2214
7XAM|1|A|U|2215
7XAM|1|A|G|2216
7XAM|1|A|U|2217
7XAM|1|A|C|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14