IL_7XNX_012

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_012 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3578

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7XNX|1|L1|G|177
7XNX|1|L1|C|178
*
7XNX|1|L1|G|258
7XNX|1|L1|C|259
7XNX|1|L1|C|260

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35