IL_7XNX_014

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

7XNX|1|L1|C|183, 7XNX|1|L1|C|185, 7XNX|1|L1|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|182
7XNX|1|L1|C|183
7XNX|1|L1|U|184
7XNX|1|L1|C|185
7XNX|1|L1|G|186
7XNX|1|L1|U|187
7XNX|1|L1|G|188
7XNX|1|L1|G|189
*
7XNX|1|L1|C|252
7XNX|1|L1|G|253
7XNX|1|L1|G|254
7XNX|1|L1|C|255

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37