IL_7XNX_036

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

7XNX|1|L1|A|943, 7XNX|1|L1|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_036 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2837

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7XNX|1|L1|A|723
7XNX|1|L1|C|724
*
7XNX|1|L1|G|942
7XNX|1|L1|A|943
7XNX|1|L1|A|944
7XNX|1|L1|U|945

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7