IL_7XNX_038

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

7XNX|1|L1|A|932, 7XNX|1|L1|C|934, 7XNX|1|L1|A|935, 7XNX|1|L1|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|A|732
7XNX|1|L1|A|733
7XNX|1|L1|G|734
7XNX|1|L1|G|735
*
7XNX|1|L1|C|928
7XNX|1|L1|A|929
7XNX|1|L1|G|930
7XNX|1|L1|C|931
7XNX|1|L1|A|932
7XNX|1|L1|G|933
7XNX|1|L1|C|934
7XNX|1|L1|A|935
7XNX|1|L1|C|936
7XNX|1|L1|U|937

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a