IL_7XNX_046

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAC*GAG

Length

6 nucleotides

Bulged bases

7XNX|1|L1|A|1222

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_046 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.3509

The information below is about IL_8UO6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7XNX|1|L1|C|1077
7XNX|1|L1|A|1078
7XNX|1|L1|C|1079
*
7XNX|1|L1|G|1221
7XNX|1|L1|A|1222
7XNX|1|L1|G|1234

Current chains

Chain L1

28S rRNA

Nearby chains