IL_7XNX_048

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7XNX|1|L1|C|1214, 7XNX|1|L1|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_048 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.2627

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7XNX|1|L1|C|1082
7XNX|1|L1|U|1083
7XNX|1|L1|C|1084
*
7XNX|1|L1|G|1213
7XNX|1|L1|C|1214
7XNX|1|L1|C|1215
7XNX|1|L1|C|1216
7XNX|1|L1|G|1217

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29