IL_7XNX_052

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGG*UGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_052 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3292

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7XNX|1|L1|C|1172
7XNX|1|L1|G|1173
7XNX|1|L1|G|1174
*
7XNX|1|L1|U|1186
7XNX|1|L1|G|1187
7XNX|1|L1|C|1188
7XNX|1|L1|G|1189

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5