IL_7XNX_070

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

7XNX|1|L1|A|1701, 7XNX|1|L1|C|1707, 7XNX|1|L1|G|1708, 7XNX|1|L1|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|C|1694
7XNX|1|L1|U|1695
7XNX|1|L1|C|1696
7XNX|1|L1|G|1697
7XNX|1|L1|C|1698
7XNX|1|L1|A|1699
7XNX|1|L1|G|1700
7XNX|1|L1|A|1701
7XNX|1|L1|C|1702
7XNX|1|L1|C|1703
7XNX|1|L1|C|1704
7XNX|1|L1|G|1705
7XNX|1|L1|A|1706
7XNX|1|L1|C|1707
7XNX|1|L1|G|1708
7XNX|1|L1|C|1709
7XNX|1|L1|C|1714
7XNX|1|L1|C|1715
7XNX|1|L1|G|1716
7XNX|1|L1|C|1717
7XNX|1|L1|C|1718
7XNX|1|L1|A|1719
7XNX|1|L1|C|1720
7XNX|1|L1|G|1721
*
7XNX|1|L1|C|1841
7XNX|1|L1|G|1842

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29