IL_7XNX_090

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUGGC*GAAUCC

Length

12 nucleotides

Bulged bases

7XNX|1|L1|G|1975, 7XNX|1|L1|U|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|1972
7XNX|1|L1|G|1973
7XNX|1|L1|U|1974
7XNX|1|L1|G|1975
7XNX|1|L1|G|1976
7XNX|1|L1|C|1977
*
7XNX|1|L1|G|1989
7XNX|1|L1|A|1990
7XNX|1|L1|A|1991
7XNX|1|L1|U|1992
7XNX|1|L1|C|1993
7XNX|1|L1|C|1994

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A