IL_7XNX_104

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

7XNX|1|L1|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_104 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2473

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7XNX|1|L1|G|2549
7XNX|1|L1|G|2550
*
7XNX|1|L1|C|2768
7XNX|1|L1|U|2769
7XNX|1|L1|C|2770

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34