IL_7XNX_113

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_113 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3556

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7XNX|1|L1|G|2846
7XNX|1|L1|G|2847
7XNX|1|L1|G|2848
7XNX|1|L1|A|2849
7XNX|1|L1|A|2850
*
7XNX|1|L1|U|3840
7XNX|1|L1|OMC|3841
7XNX|1|L1|C|3842

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24