IL_7XNX_118

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

7XNX|1|L1|G|2902, 7XNX|1|L1|U|3595, 7XNX|1|L1|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|2901
7XNX|1|L1|G|2902
7XNX|1|L1|G|2903
7XNX|1|L1|U|2904
7XNX|1|L1|C|2905
*
7XNX|1|L1|G|3589
7XNX|1|L1|G|3590
7XNX|1|L1|C|3591
7XNX|1|L1|G|3592
7XNX|1|L1|C|3593
7XNX|1|L1|C|3594
7XNX|1|L1|U|3595
7XNX|1|L1|A|3596
7XNX|1|L1|G|3597
7XNX|1|L1|C|3598

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11