IL_7XNX_129

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|3714
7XNX|1|L1|PSU|3715
7XNX|1|L1|C|3716
7XNX|1|L1|A|3717
7XNX|1|L1|A2M|3718
7XNX|1|L1|A|3719
7XNX|1|L1|G|3720
7XNX|1|L1|U|3721
*
7XNX|1|L1|A|3732
7XNX|1|L1|A|3733
7XNX|1|L1|U|3734
7XNX|1|L1|G|3735
7XNX|1|L1|A|3736
7XNX|1|L1|A|3737
7XNX|1|L1|G|3738
7XNX|1|L1|C|3739

Current chains

Chain L1

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36