IL_7XNX_140

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUGUAGAAUAAG*UAC

Length

16 nucleotides

Bulged bases

7XNX|1|L1|A|3962, 7XNX|1|L1|A|3965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|3955
7XNX|1|L1|G|3956
7XNX|1|L1|U|3957
7XNX|1|L1|G|3958
7XNX|1|L1|U|3959
7XNX|1|L1|A|3960
7XNX|1|L1|G|3961
7XNX|1|L1|A|3962
7XNX|1|L1|A|3963
7XNX|1|L1|U|3964
7XNX|1|L1|A|3965
7XNX|1|L1|A|3966
7XNX|1|L1|G|3967
*
7XNX|1|L1|U|4055
7XNX|1|L1|A|4056
7XNX|1|L1|C|4057

Current chains

Chain L1

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA