IL_7XNX_144

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7XNX|1|L1|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_144 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1931

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7XNX|1|L1|G|4291
7XNX|1|L1|A|4292
7XNX|1|L1|PSU|4293
7XNX|1|L1|C|4294
*
7XNX|1|L1|G|4316
7XNX|1|L1|A|4317
7XNX|1|L1|C|4318

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a