IL_7XNX_149

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_149 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0818

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7XNX|1|L1|C|4412
7XNX|1|L1|C|4413
7XNX|1|L1|A|4414
7XNX|1|L1|A|4415
7XNX|1|L1|G|4416
*
7XNX|1|L1|C|4426
7XNX|1|L1|G|4427
7XNX|1|L1|A|4428
7XNX|1|L1|C|4429
7XNX|1|L1|G|4430

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A

Chain Lm

Ubiquitin-60S ribosomal protein L40