IL_7XNX_151

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMC)UC*GUG(A2M)GC

Length

10 nucleotides

Bulged bases

7XNX|1|L1|G|4522

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_151 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3274

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7XNX|1|L1|G|4455
7XNX|1|L1|OMC|4456
7XNX|1|L1|U|4457
7XNX|1|L1|C|4458
*
7XNX|1|L1|G|4520
7XNX|1|L1|U|4521
7XNX|1|L1|G|4522
7XNX|1|L1|A2M|4523
7XNX|1|L1|G|4524
7XNX|1|L1|C|4525

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23