IL_7XNX_170

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGG*CGUG

Length

7 nucleotides

Bulged bases

7XNX|1|L1|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_170 not in the Motif Atlas

Homologous match to IL_8GLP_167

Geometric discrepancy: 0.0902

The information below is about IL_8GLP_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31990.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

2

Unit IDs

7XNX|1|L1|C|4749
7XNX|1|L1|G|4750
7XNX|1|L1|G|4751
*
7XNX|1|L1|C|4948
7XNX|1|L1|G|4949
7XNX|1|L1|U|4950
7XNX|1|L1|G|4951

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a