IL_7XNX_171

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

7XNX|1|L1|C|4757, 7XNX|1|L1|U|4758, 7XNX|1|L1|A|4764, 7XNX|1|L1|G|4870, 7XNX|1|L1|C|4871, 7XNX|1|L1|G|4873, 7XNX|1|L1|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|C|4756
7XNX|1|L1|C|4757
7XNX|1|L1|U|4758
7XNX|1|L1|C|4759
7XNX|1|L1|G|4760
7XNX|1|L1|G|4761
7XNX|1|L1|A|4762
7XNX|1|L1|U|4763
7XNX|1|L1|A|4764
7XNX|1|L1|G|4765
*
7XNX|1|L1|U|4869
7XNX|1|L1|G|4870
7XNX|1|L1|C|4871
7XNX|1|L1|G|4872
7XNX|1|L1|G|4873
7XNX|1|L1|A|4874
7XNX|1|L1|G|4875
7XNX|1|L1|U|4876
7XNX|1|L1|G|4877

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a