IL_7XNX_182

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_182 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.0862

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7XNX|1|L1|A|5014
7XNX|1|L1|G|5015
7XNX|1|L1|A|5016
7XNX|1|L1|G|5017
*
7XNX|1|L1|C|5032
7XNX|1|L1|G|5033
7XNX|1|L1|A|5034
7XNX|1|L1|U|5035

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8