IL_7XNX_259

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACAGGA*UUCC

Length

12 nucleotides

Bulged bases

7XNX|1|S2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|S2|G|1280
7XNX|1|S2|G|1281
7XNX|1|S2|A|1282
7XNX|1|S2|C|1283
7XNX|1|S2|A|1284
7XNX|1|S2|G|1285
7XNX|1|S2|G|1286
7XNX|1|S2|A|1287
*
7XNX|1|S2|U|1314
7XNX|1|S2|U|1315
7XNX|1|S2|C|1316
7XNX|1|S2|C|1317

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a