IL_7XNX_279

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_279 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1139

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7XNX|1|S2|G|1706
7XNX|1|S2|U|1707
7XNX|1|S2|C|1708
*
7XNX|1|S2|G|1826
7XNX|1|S2|U|1827
7XNX|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CE

Ubiquitin-40S ribosomal protein S27a

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41