IL_7XNX_292

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUCCC*GGCCC

Length

11 nucleotides

Bulged bases

7XNX|1|L1|U|171, 7XNX|1|L1|C|172, 7XNX|1|L1|C|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|169
7XNX|1|L1|C|170
7XNX|1|L1|U|171
7XNX|1|L1|C|172
7XNX|1|L1|C|173
7XNX|1|L1|C|174
*
7XNX|1|L1|G|262
7XNX|1|L1|G|263
7XNX|1|L1|C|264
7XNX|1|L1|C|265
7XNX|1|L1|C|266

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35