IL_7XNX_294

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

7XNX|1|L1|G|1359, 7XNX|1|L1|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|C|1357
7XNX|1|L1|G|1358
7XNX|1|L1|G|1359
7XNX|1|L1|G|1360
7XNX|1|L1|G|1361
*
7XNX|1|L1|C|1376
7XNX|1|L1|G|1377
7XNX|1|L1|C|1378
7XNX|1|L1|C|1379
7XNX|1|L1|G|1380
7XNX|1|L1|U|1381
7XNX|1|L1|G|1382

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27