IL_7XNX_303

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGACAUGAGAG*CUCUGAUCGUUU

Length

23 nucleotides

Bulged bases

7XNX|1|L1|A|3947, 7XNX|1|L1|C|3948, 7XNX|1|L1|U|4058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|A|3945
7XNX|1|L1|G|3946
7XNX|1|L1|A|3947
7XNX|1|L1|C|3948
7XNX|1|L1|A|3949
7XNX|1|L1|U|3950
7XNX|1|L1|G|3951
7XNX|1|L1|A|3952
7XNX|1|L1|G|3953
7XNX|1|L1|A|3954
7XNX|1|L1|G|3955
*
7XNX|1|L1|C|4057
7XNX|1|L1|U|4058
7XNX|1|L1|C|4059
7XNX|1|L1|U|4060
7XNX|1|L1|G|4061
7XNX|1|L1|A|4062
7XNX|1|L1|U|4063
7XNX|1|L1|C|4064
7XNX|1|L1|G|4065
7XNX|1|L1|U|4066
7XNX|1|L1|U|4067
7XNX|1|L1|U|4068

Current chains

Chain L1

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a