IL_7XNX_319

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_319 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2392

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7XNX|1|S2|C|1279
7XNX|1|S2|G|1280
7XNX|1|S2|G|1281
*
7XNX|1|S2|C|1317
7XNX|1|S2|G|1318

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a