IL_7Y41_007

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1114

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7Y41|1|A|U|239
7Y41|1|A|G|240
7Y41|1|A|A|241
7Y41|1|A|G|242
7Y41|1|A|U|243
7Y41|1|A|A|244
7Y41|1|A|G|245
*
7Y41|1|A|C|253
7Y41|1|A|G|254
7Y41|1|A|A|255
7Y41|1|A|A|256
7Y41|1|A|A|257
7Y41|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35