IL_7Y41_034

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_034 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2945

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|C|991
7Y41|1|A|C|992
7Y41|1|A|G|993
7Y41|1|A|A|994
7Y41|1|A|U|995
7Y41|1|A|G|996
*
7Y41|1|A|C|1012
7Y41|1|A|U|1013
7Y41|1|A|G|1014
7Y41|1|A|A|1015
7Y41|1|A|C|1016
7Y41|1|A|G|1017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L25