IL_7Y41_082

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_082 not in the Motif Atlas

Geometric match to IL_1LNT_002

Geometric discrepancy: 0.389

The information below is about IL_1LNT_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7Y41|1|A|U|1937
7Y41|1|A|G|1938
7Y41|1|A|U|1939
7Y41|1|A|A|1940
7Y41|1|A|A|1941
7Y41|1|A|G|1942
*
7Y41|1|A|C|1952
7Y41|1|A|C|1953
7Y41|1|A|C|1954
7Y41|1|A|A|1955
7Y41|1|A|A|1956
7Y41|1|A|G|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains