IL_7Y41_085

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7Y41|1|A|G|2018, 7Y41|1|A|U|2033, 7Y41|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_085 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0895

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|U|2015
7Y41|1|A|G|2016
7Y41|1|A|C|2017
7Y41|1|A|G|2018
7Y41|1|A|A|2019
7Y41|1|A|A|2020
7Y41|1|A|G|2021
*
7Y41|1|A|C|2030
7Y41|1|A|G|2031
7Y41|1|A|A|2032
7Y41|1|A|U|2033
7Y41|1|A|G|2034
7Y41|1|A|U|2035
7Y41|1|A|A|2036
7Y41|1|A|U|2037
7Y41|1|A|A|2038

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2