IL_7Y41_090

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_090 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.276

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|A|2073
7Y41|1|A|G|2074
7Y41|1|A|G|2075
7Y41|1|A|A|2076
7Y41|1|A|C|2077
7Y41|1|A|C|2078
*
7Y41|1|A|G|2105
7Y41|1|A|A|2106
7Y41|1|A|G|2107
7Y41|1|A|A|2108
7Y41|1|A|A|2109
7Y41|1|A|U|2110

Current chains

Chain A

23S ribosomal RNA

Nearby chains