IL_7Y41_119

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7Y41|1|A|G|2800, 7Y41|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_119 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1133

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

7Y41|1|A|C|2734
7Y41|1|A|U|2735
7Y41|1|A|C|2736
*
7Y41|1|A|G|2798
7Y41|1|A|C|2799
7Y41|1|A|G|2800
7Y41|1|A|A|2801
7Y41|1|A|G|2802

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32