IL_7Y7C_019

3D structure

PDB id

7Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7C_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.097

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7Y7C|1|A|U|409
7Y7C|1|A|G|410
7Y7C|1|A|A|411
7Y7C|1|A|A|412
7Y7C|1|A|G|413
7Y7C|1|A|A|414
7Y7C|1|A|A|415
7Y7C|1|A|G|416
*
7Y7C|1|A|U|427
7Y7C|1|A|G|428
7Y7C|1|A|U|429
7Y7C|1|A|A|430
7Y7C|1|A|A|431
7Y7C|1|A|A|432
7Y7C|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4