IL_7Y7E_136

3D structure

PDB id

7Y7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7Y7E|1|a|A|1899, 7Y7E|1|a|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7E_136 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7Y7E|1|a|U|1841
7Y7E|1|a|G|1842
*
7Y7E|1|a|U|1898
7Y7E|1|a|A|1899
7Y7E|1|a|A|1900
7Y7E|1|a|A|1901

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2