3D structure

PDB id
7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
AGG*CA(OMC)CU
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Y7E_152 not in the Motif Atlas
Homologous match to IL_5J7L_335
Geometric discrepancy: 0.072
The information below is about IL_5J7L_335
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7Y7E|1|a|A|2453
7Y7E|1|a|G|2454
7Y7E|1|a|G|2455
*
7Y7E|1|a|C|2496
7Y7E|1|a|A|2497
7Y7E|1|a|OMC|2498
7Y7E|1|a|C|2499
7Y7E|1|a|U|2500

Current chains

Chain a
23S rRNA

Nearby chains

Chain V
Transfer RNA; tRNA
Chain d
50S ribosomal protein L3
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


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