3D structure

PDB id
7Y7G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.34 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Y7G_176 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.0692
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

7Y7G|1|A|A|673
7Y7G|1|A|G|674
7Y7G|1|A|A|675
7Y7G|1|A|A|676
7Y7G|1|A|U|677
*
7Y7G|1|A|G|713
7Y7G|1|A|G|714
7Y7G|1|A|A|715
7Y7G|1|A|A|716
7Y7G|1|A|U|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6, fully modified isoform
Chain K
30S ribosomal protein S11
Chain R
30S ribosomal protein S18
Chain U
30S ribosomal protein S21
Chain c
50S ribosomal protein L2

Coloring options:


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