IL_7YG8_003

3D structure

PDB id

7YG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAAAG*UAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7YG8|1|N|G|112
7YG8|1|N|A|113
7YG8|1|N|A|114
7YG8|1|N|A|115
7YG8|1|N|G|116
*
7YG8|1|N|U|205
7YG8|1|N|A|206
7YG8|1|N|A|207
7YG8|1|N|C|208

Current chains

Chain N

RNA (387-MER)

Nearby chains

Chain A

RNA (5'-R(*UP*CP*G)-3')