IL_7YG8_006

3D structure

PDB id

7YG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GUA*UAAUAAGC

Length

11 nucleotides

Bulged bases

7YG8|1|N|U|185, 7YG8|1|N|A|186, 7YG8|1|N|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7YG8|1|N|G|134
7YG8|1|N|U|135
7YG8|1|N|A|136
*
7YG8|1|N|U|182
7YG8|1|N|A|183
7YG8|1|N|A|184
7YG8|1|N|U|185
7YG8|1|N|A|186
7YG8|1|N|A|187
7YG8|1|N|G|188
7YG8|1|N|C|189

Current chains

Chain N

RNA (387-MER)

Nearby chains