IL_7YLA_011

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7YLA|1|I|A|504, 7YLA|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0711

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7YLA|1|I|G|481
7YLA|1|I|A|482
7YLA|1|I|A|483
7YLA|1|I|C|484
*
7YLA|1|I|G|496
7YLA|1|I|A|497
7YLA|1|I|G|498
7YLA|1|I|U|499
7YLA|1|I|G|500
7YLA|1|I|A|501
7YLA|1|I|A|502
7YLA|1|I|A|503
7YLA|1|I|A|504
7YLA|1|I|A|505
7YLA|1|I|G|506
7YLA|1|I|A|507
7YLA|1|I|A|508
7YLA|1|I|C|509

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain a

50S ribosomal protein L22

Chain c

50S ribosomal protein L24