IL_7Z4D_003
3D structure
- PDB id
- 7Z4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAG*CAAGUU
- Length
- 10 nucleotides
- Bulged bases
- 7Z4D|1|F|A|28, 7Z4D|1|F|U|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7Z4D_003 not in the Motif Atlas
- Geometric match to IL_7Z4D_001
- Geometric discrepancy: 0.0442
- The information below is about IL_7Z4D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82683.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
7Z4D|1|F|A|26
7Z4D|1|F|G|27
7Z4D|1|F|A|28
7Z4D|1|F|G|29
*
7Z4D|1|F|C|40
7Z4D|1|F|A|41
7Z4D|1|F|A|42
7Z4D|1|F|G|43
7Z4D|1|F|U|44
7Z4D|1|F|U|45
Current chains
- Chain F
- sgRNA
Nearby chains
- Chain E
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: