IL_7Z4J_007

3D structure

PDB id

7Z4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to 18-nucleotide complementary DNA substrate in the catalytic state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.99 Å

Loop

Sequence

GAATC*GATTC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Z4J|1|D|DG|2
7Z4J|1|D|DA|3
7Z4J|1|D|DA|4
7Z4J|1|D|DT|5
7Z4J|1|D|DC|6
*
7Z4J|1|c|DG|-6
7Z4J|1|c|DA|-5
7Z4J|1|c|DT|-4
7Z4J|1|c|DT|-3
7Z4J|1|c|DC|-2

Current chains

Chain D

Non-target strand of 18-nucleotide complementary DNA substrate

Chain c

Target strand of 18-nucleotide complementary DNA substrate, PAM-proximal end

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1