IL_7ZAH_078

3D structure

PDB id

7ZAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(5MC)U*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZAH_078 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1206

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZAH|1|2|C|1504
7ZAH|1|2|5MC|1505
7ZAH|1|2|U|1506
*
7ZAH|1|5|A|7
7ZAH|1|5|G|8
7ZAH|1|5|G|9

Current chains

Chain 2

16S rRNA

Chain 5

mRNA

Nearby chains

Chain A

30S ribosomal protein S3Ae