IL_7ZHG_026

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7ZHG|1|2|A|498, 7ZHG|1|2|U|500, 7ZHG|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|G|481
7ZHG|1|2|U|482
7ZHG|1|2|G|483
7ZHG|1|2|G|484
7ZHG|1|2|C|485
7ZHG|1|2|A|486
7ZHG|1|2|G|487
*
7ZHG|1|2|C|494
7ZHG|1|2|G|495
7ZHG|1|2|G|496
7ZHG|1|2|U|497
7ZHG|1|2|A|498
7ZHG|1|2|A|499
7ZHG|1|2|U|500
7ZHG|1|2|A|501
7ZHG|1|2|C|502

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain N

30S ribosomal protein S12

Chain Z

30S ribosomal protein S3