IL_7ZHG_045

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|G|858
7ZHG|1|2|G|859
7ZHG|1|2|A|860
7ZHG|1|2|G|861
7ZHG|1|2|U|862
7ZHG|1|2|A|863
7ZHG|1|2|C|864
7ZHG|1|2|G|865
*
7ZHG|1|2|U|876
7ZHG|1|2|G|877
7ZHG|1|2|A|878
7ZHG|1|2|A|879
7ZHG|1|2|A|880
7ZHG|1|2|C|881

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 0

50S ribosomal protein L41e

Chain N

30S ribosomal protein S12