IL_7ZHG_060

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

UA(OMC)(LHH)GUGAGGCGUC*GUAA

Length

18 nucleotides

Bulged bases

7ZHG|1|2|A|1066

QA status

Modified nucleotides: OMC, LHH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|U|1038
7ZHG|1|2|A|1039
7ZHG|1|2|OMC|1040
7ZHG|1|2|LHH|1041
7ZHG|1|2|G|1042
7ZHG|1|2|U|1043
7ZHG|1|2|G|1044
7ZHG|1|2|A|1045
7ZHG|1|2|G|1046
7ZHG|1|2|G|1047
7ZHG|1|2|C|1048
7ZHG|1|2|G|1049
7ZHG|1|2|U|1050
7ZHG|1|2|C|1051
*
7ZHG|1|2|G|1064
7ZHG|1|2|U|1065
7ZHG|1|2|A|1066
7ZHG|1|2|A|1067

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain B

30S ribosomal protein S2

Chain F

30S ribosomal protein S5