3D structure

PDB id
7ZHG (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
GACAAUG*CCUAAAC
Length
14 nucleotides
Bulged bases
7ZHG|1|2|U|1260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZHG|1|2|G|1221
7ZHG|1|2|A|1222
7ZHG|1|2|C|1223
7ZHG|1|2|A|1224
7ZHG|1|2|A|1225
7ZHG|1|2|U|1226
7ZHG|1|2|G|1227
*
7ZHG|1|2|C|1258
7ZHG|1|2|C|1259
7ZHG|1|2|U|1260
7ZHG|1|2|A|1261
7ZHG|1|2|A|1262
7ZHG|1|2|A|1263
7ZHG|1|2|C|1264

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain H
30S ribosomal protein S7
Chain K
30S ribosomal protein S9
Chain L
30S ribosomal protein S10
Chain P
30S ribosomal protein S14 type Z
Chain U
30S ribosomal protein S19e

Coloring options:

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