IL_7ZHG_069

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

7ZHG|1|2|A|1472

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|C|1373
7ZHG|1|2|5MC|1374
7ZHG|1|2|G|1375
*
7ZHG|1|2|C|1470
7ZHG|1|2|A|1471
7ZHG|1|2|A|1472
7ZHG|1|2|G|1473

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 0

50S ribosomal protein L41e

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA

Chain M

30S ribosomal protein S11